NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182092_1349858

Scaffold Ga0182092_1349858


Overview

Basic Information
Taxon OID3300016734 Open in IMG/M
Scaffold IDGa0182092_1349858 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024567Metagenome / Metatranscriptome205N
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0182092_13498581F031509GGAGMSDRPDRINYIVKVLWPPHCRNRNQKVLEDRSDIVKEMNGMRSKLENFLKASCSGSFKVSNEYDMQGFNIRLEQGPDVYNLILEQATIGYEVDREIGRYNIFSDKYIKHKILY
Ga0182092_13498582F024567N/AYKKYVFYDEVHSFPPISPQFNLTLDVNTDDQTLALLSALGLCDKRILLVGYDISDHRVLKDLRSVIMLHPDMKFYFLCNPPKTKQLDYCSNAECILFKDMERLKNV
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