NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182047_1298112

Scaffold Ga0182047_1298112


Overview

Basic Information
Taxon OID3300016737 Open in IMG/M
Scaffold IDGa0182047_1298112 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011506CT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1859
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014254Metagenome / Metatranscriptome264N
F077250Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0182047_12981121F014254AGAAGGMSFKDECERLGWWFRTKPQGTTITHTLMNGSGVLIVPLQQRERFYEMCMKCLVNREKLFMVEQTKSSDRFRMFLDIDYVTSGEQGAVTDETIKRWATQLYVAFPTLGSVLVSTCTRKQGDDFKNGIHFSWPSVTVTSTSALNILNRVTAVLVDYDPDVPWKTVLDKSVFKTGLRTIWSYKVKRDTKELVEPYVPRFEISKDGFKDITKDTPAAKILQYFSILPHGTESEHFGNSE
Ga0182047_12981125F077250N/ALVFIISYKPGSGTIQKWFGVKEGMHHEMMEGEAVEKPIFKVTSRDEINARELNNIFGAQQ
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