NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182083_1780327

Scaffold Ga0182083_1780327


Overview

Basic Information
Taxon OID3300016743 Open in IMG/M
Scaffold IDGa0182083_1780327 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413AT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012180Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0182083_17803271F012180AGGAMKQLTLVLAILFGFATGALANDKSLEERVEALENNIPNLPQGFFVNGEVEGYYDDKTYDSGWDSRAELQLGISTNIPETLSVDWIGASMKYDTHYSLDTTLNNTVQEKQLGFGNDVARWYIGETDAQRMGFAKTPKISVPLIYTETNYRIDHREKTVLTFGGWEYDNEFDFDSYRLKKEQPWGVSLGWDNDGNVGYATGTISLMGYADVSYMRITSPEDSGKGDQEGYSIGGSLYRWNVPLVWGVELWDDKNTGTYTKDDRLDYGVMYNVNKNVYVTAHRTENDDLGYDGNYYGVVYNLATNYDPSKRSDKQDGLEMGLYYHDKGGRS
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