NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181505_10400358

Scaffold Ga0181505_10400358


Overview

Basic Information
Taxon OID3300016750 Open in IMG/M
Scaffold IDGa0181505_10400358 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3822
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y
F025325Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0181505_104003581F014888AGGAGMNKAMEVLLTVVALAGLYSAILTSTLPPRNSAIRAKQAVVVADGSDPMPLCRTAHCQQ
Ga0181505_104003583F003832N/AMRMIKSTAKQVGTGANWPPEEGQVISFKSSTGFETDILKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQAWRKISEVTDQEREECEERLLSMAGAGMDPRKRDQSFWAELNQYLAYTYLRFKPAESKLQDQEKDKDREKDR
Ga0181505_104003584F005268GAGGVSQSDDEPDELQVWRVLSEAGLVEIRLDEFAERIRDVKRIVTGRLRDLLDFDTGVQERESVAYSLGTLTGLELKVLANAPKPPDPSKI
Ga0181505_104003585F025325GGAGGMVSDDPKKRLQKTCDELVAAASVETDPEKLATMLEEIFAALEERERTRSLRQNPSCF
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