NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181505_11190806

Scaffold Ga0181505_11190806


Overview

Basic Information
Taxon OID3300016750 Open in IMG/M
Scaffold IDGa0181505_11190806 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001520Metagenome / Metatranscriptome679Y
F035921Metagenome / Metatranscriptome171Y
F094226Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181505_111908061F035921N/AHITLTDPVRVRFSARVIRVESPLPSSRIGIAAMIENYEFLRSDGEADFLTALQNEWKTN
Ga0181505_111908062F001520GGAGGMNAIKFLFAAYIVTWVIHGAYLGSLVRRFSRLRRELADTHKDSR
Ga0181505_111908063F094226N/AHPQPVIGGGGSMDPRMLHTLLISWLAFLCFAFLVCWSRFRLELLQREVEEAHAMESLSGAVDQVSLPLSRRAQ
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