NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182082_1083250

Scaffold Ga0182082_1083250


Overview

Basic Information
Taxon OID3300016771 Open in IMG/M
Scaffold IDGa0182082_1083250 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033271Metagenome / Metatranscriptome177N
F040951Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0182082_10832502F033271AGGAMKKNIYLLSLLFLLSIKSHSSSETFEENYACGVDMYMLSSIFRLSTEKSDNLELKNAAIREHTLWEKVNLSLLSERELDIAKRKERLKSDMIKRLTSLHEERGLENILTENFIDEATDGCFGDTKIQKVYNLYYAGMKNG
Ga0182082_10832503F040951AGGAGMIISYEEPPNRKHFDSEEEYQKAFKEWKEMFDSIL

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