NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182090_1105813

Scaffold Ga0182090_1105813


Overview

Basic Information
Taxon OID3300016797 Open in IMG/M
Scaffold IDGa0182090_1105813 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1145
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004086Metagenome / Metatranscriptome454Y
F015398Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0182090_11058131F004086N/ASGTMDLEVAESVNLDGTINYTNINSNLTQGTKEKNIGFYYNKSGEKELDASFNFTAEYRMDKSGVANNDGVEVGMNFVKKFAGSCKFLWMKNPKCFDEDGNMKADLFGTSTSNATKHGLVYDLETDKFIPIKK
Ga0182090_11058134F015398GGAGMGTEKLKFRLELYATMWDKPPHAEIMINDENYFKGEITGTEKKPDVIEFDVTLDEGKEYNIVINRLGKSKGQTVVNTK

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