NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182090_1182076

Scaffold Ga0182090_1182076


Overview

Basic Information
Taxon OID3300016797 Open in IMG/M
Scaffold IDGa0182090_1182076 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F010001Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0182090_11820761F000464N/AMKLSQHQKIQMYSHTDHDLDVEEDFWPIMSILLAILGVWTGVVHFIDWLTIDLIPWWMEPFTIAPVIFLLIMKEHYDSLNPLHWWPMFWGYEAKLPEQDRITIRPLDTERIMQQHGGRLNVYIIDYEHIKFRRRKDAVIFGLRYF
Ga0182090_11820763F010001N/AQDRASKDEVRLLRAQIGNLEVQVADYQQIVKELSDKLSVYEKKYGTVFRPARKD

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