Basic Information | |
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Taxon OID | 3300016815 Open in IMG/M |
Scaffold ID | Ga0186384_10391 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 706 ?mol photons light - Ostreococcus lucimarinus clade A BCC 118000 (MMETSP0939) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4165 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 3.145 | Long. (o) | 42.488 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F047107 | Metagenome / Metatranscriptome | 150 | N |
Protein ID | Family | RBS | Sequence |
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Ga0186384_103911 | F047107 | GAGG | VNRVRNVGLPVGDRAFLGGERLEDAAQPREHGQAAVLELLDLEFFKVARLGEAERVEASTRVDVTDGEAIIERRVGDTGTVRFRGADENDLDDENVPEGRVARAFRRERGDGARELVRDGGAVIRGAQGTRGEPRDAGAVFGGPRAGDAEHRPAAVDHFTLGVLFVAERDDRGFATARVGTEFRVDVSLDGRGDRLGLDLGRLEGGDAADEGGSEKGRHCRNVRVQESYRI |
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