NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186384_10391

Scaffold Ga0186384_10391


Overview

Basic Information
Taxon OID3300016815 Open in IMG/M
Scaffold IDGa0186384_10391 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Mediterranean Sea in L1 medium w/o silica, 20 C, 35 psu salinity and 706 ?mol photons light - Ostreococcus lucimarinus clade A BCC 118000 (MMETSP0939)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4165
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)3.145Long. (o)42.488Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047107Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0186384_103911F047107GAGGVNRVRNVGLPVGDRAFLGGERLEDAAQPREHGQAAVLELLDLEFFKVARLGEAERVEASTRVDVTDGEAIIERRVGDTGTVRFRGADENDLDDENVPEGRVARAFRRERGDGARELVRDGGAVIRGAQGTRGEPRDAGAVFGGPRAGDAEHRPAAVDHFTLGVLFVAERDDRGFATARVGTEFRVDVSLDGRGDRLGLDLGRLEGGDAADEGGSEKGRHCRNVRVQESYRI
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Institute for Fundamental Biomedical Research
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