NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186415_106029

Scaffold Ga0186415_106029


Overview

Basic Information
Taxon OID3300016879 Open in IMG/M
Scaffold IDGa0186415_106029 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Indian Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 550 ?mol photons light - unclassified eukaryote RCC 701 (MMETSP1453)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037232Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0186415_1060291F037232N/AMSAFKIYDLVNTVYGTGYVAAIRSDCYVVLLTHWKLAQGQSPTLYLQAEAMTLIPGALPGTVVKTPFGPAQLQSVRADNMHIAKPINWKLANNTIATMYLQPEVVQLTQTPGFNEGDEVMTVYGQGFVQSKREKEGDLVVLLRNWALAQGQSPTCYLHPSACVKIPGLQIGAAMKTVWGLMRLLSIRRDGTHVCEAMHWNLADGKPPRCYLAPEAFALVSIKP
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