NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186195_110733

Scaffold Ga0186195_110733


Overview

Basic Information
Taxon OID3300016880 Open in IMG/M
Scaffold IDGa0186195_110733 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in DY-V medium with 0.001% Yeast extract and Rice grains, at 18 C, 0 psu salinity and 385 ?mol photons light - Ochromonas sp. BG-1 (MMETSP1105)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037232Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0186195_1107332F037232N/AMAFKIFDLVNTIYGTGYISEIRSDCYVVLLTNWALAQGQSPTLYLQEDALKPITDALPGTTITTPFGPSQLLKIRADNVHVAKPIHWKLANNAAPTLFLQPEVIGLNQTPGLHEGDEVMTVYGQGYIEKQRETDFVVKLRHWKLAQGQSPTCYLQAAALVKIPGLTVGSYAKTVWGLVKVLEIRRDGTHVCQASHWNLANNKPPTLYLAPEAFALLSIKP
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Institute for Fundamental Biomedical Research
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