NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186369_100816

Scaffold Ga0186369_100816


Overview

Basic Information
Taxon OID3300016887 Open in IMG/M
Scaffold IDGa0186369_100816 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from North Atlantic Ocean in L1 medium with natural Eastern Pacific seawater, no silica (Eastern Pacific), 21 C, 35 psu salinity and 419 ?mol photons light - micromonas sp. RCC451 (MMETSP1400)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3863
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062730Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0186369_1008162F062730GAGMCDTYNMGTETPVGYRLVRVGVRGRVPTLHTRAPEDLTTRQKYDLRYREKHRAKLLAYHREYYRKKRKLY
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