Basic Information | |
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Taxon OID | 3300016940 Open in IMG/M |
Scaffold ID | Ga0186511_111835 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in marine media K with soil extract, 18 C, 35 psu salinity and 456 ?mol photons light - Ochromonas sp. CCMP1393 (MMETSP0005) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 821 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: Euk_MAG) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 38.702 | Long. (o) | -72.3667 | Alt. (m) | Depth (m) | 22.5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F037232 | Metagenome / Metatranscriptome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186511_1118351 | F037232 | N/A | NLSLTSSIQKPVLSSPNMPAFKIYDLVNTAYGTGYVTDIRSDCYVVLLTHWALAQGQSPTLFLQEEGMTLIPGALPGTTVKTPFGAARMEAVRNDDIHIAKPINWKLANDTIATMYLNPEAVELDCTAGFNEGDEVMTVYGRGYVEGKREETGDLVVKLRNWALAQGQSPTCYLDPATCVKIPGMEIGAAAKTVWGLMRLLEVRRDGTHVCEAMHWNLADGKPPRAYLAPEAFALLSIKPGSL |
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