Scaffold Ga0186670_113646

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186670_113646

Scaffold Ga0186670_113646

Overview

Basic Information
Taxon OID	3300017026 Open in IMG/M
Scaffold ID	Ga0186670_113646 Open in IMG/M
Source Dataset Name	Metatranscriptome of coastal eukaryotic communities from Pacific Ocean in 0.2u filtered seawater with ES enrichments, Urea, 15 C, 33 psu salinity and 97 ?mol photons light - Pseudo-nitzschia australis 10249 10 AB (MMETSP0141_2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	651
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	36.60369	Long. (^o)	-121.88927	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098601	Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186670_1136461	F098601	N/A	MGKPKKSPKEEELVLSKKDLKKVTKLESQIPYHEGRGNKEEVQKVRDQIAAIWTKTKEAYEASLQ

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