NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186077_106502

Scaffold Ga0186077_106502


Overview

Basic Information
Taxon OID3300017061 Open in IMG/M
Scaffold IDGa0186077_106502 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in MLH medium with 10g/L glucose, double vitamins, at 27 C, 30 psu salinity and 658 ?mol photons light - Crypthecodinium cohnii Seligo (MMETSP0323_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000665Metagenome / Metatranscriptome949Y

Sequences

Protein IDFamilyRBSSequence
Ga0186077_1065021F000665N/ASNPQFKGLENSLGAVYYNFPHSGAIQGFFDGHPVVNWRHENLMRLFFRALRSFMKPGGIVKVASNMNAVGVRYSYIIGSAVENEFIHFETMPFLEWHLHRYGRSYGDKRDIYKRPDAQKNQSYNAQAADRDMVYCFVYQPTGEQLPPQFVRLPPSLKTLSGCPDGPFKNLQGAAKLATAKQLHQRFVTEISGTHVG
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