NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186174_112810

Scaffold Ga0186174_112810


Overview

Basic Information
Taxon OID3300017172 Open in IMG/M
Scaffold IDGa0186174_112810 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 23 C, 0 psu salinity and 284 ?mol photons light - Proteomonas sulcata CCMP 704 (MMETSP1049)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026478Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0186174_1128101F026478N/APQPLSPSAPQMKVLRVAAILAIVACSSAAKPKRKAIDLNDENVVKAKDFALAEIIKLSDSYRDMKINKLMTAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEDSKKDEL
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Institute for Fundamental Biomedical Research
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