NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186117_115690

Scaffold Ga0186117_115690


Overview

Basic Information
Taxon OID3300017200 Open in IMG/M
Scaffold IDGa0186117_115690 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in JM medium, at 23 C, 0 psu salinity and 285 ?mol photons light - Cryptomonas curvata CCAP 979/52 (MMETSP1050)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012351Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0186117_1156902F012351N/AMVQVLTVVLRQMFADLHHLHQFVSLEQGGSVTAASWVGGTGAGEANIYFGATHITADNVHESWLSDDQVSDMNAGVNGPIDRNEGAYNGYAAVKAFWADTTNMDNLRGGDATGLATPGAQEVTSDADGVSGFGNTVHSYSGDSFY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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