NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186680_124827

Scaffold Ga0186680_124827


Overview

Basic Information
Taxon OID3300017214 Open in IMG/M
Scaffold IDGa0186680_124827 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 326 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0258)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)763
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)41.56Long. (o)-70.583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024727Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0186680_1248271F024727GAGMSMADAVGWYDFQWSGGSFEVCFRPGCKFFCPKFQEAARWEMNGDQVKIDWGRFGKYEMTFSANKTMEGHKVPKNEADEKNWRKALFKRPLSDVEQILVGDGAGTAWDFEWSGGKFPVQFKADGYNHFKCVDFPAHAHWQLDGNKLQIHWGEYGNYELDVDPAAKSMSGCSVGGDPEKDWRKAAWAKNLTDIYSHEVCEHH
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