Scaffold Ga0186680_129955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186680_129955

Scaffold Ga0186680_129955

Overview

Basic Information
Taxon OID	3300017214 Open in IMG/M
Scaffold ID	Ga0186680_129955 Open in IMG/M
Source Dataset Name	Metatranscriptome of coastal eukaryotic communities from North Atlantic Ocean in L1 medium, 22 C, 32 psu salinity and 326 ?mol photons light - Amphidinium carterae CCMP 1314 (MMETSP0258)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	532
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	41.56	Long. (^o)	-70.583	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005002	Metagenome / Metatranscriptome	415	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186680_1299551	F005002	GAG	MKMILAALTLVVASNTALAVLYPVYSPGASDTLETCSGISCTPIDCKPPFKYKSPEETGTCCPLCWADDVKTPEDRSWTKDLSGSAGMDNNADPILCRDVVCPPLVCPEYDQMFDGRCCTKCKSSAEATQADFAASYS

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