NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186341_110588

Scaffold Ga0186341_110588


Overview

Basic Information
Taxon OID3300017252 Open in IMG/M
Scaffold IDGa0186341_110588 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1131
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorthern Baffin Bay
CoordinatesLat. (o)76.285Long. (o)-73.0575Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051149Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0186341_1105881F051149N/AADWETITGGTGSVQKDTFITTITVRNHAPSLRAWLEFWRIDELLEVLESLDVMTPTDLMLLEEKEVLKIELKAVQKKHWQKAVTHSKYLEAINFDKPPSPLHLWLESWRLDRLKSGLYELGCDVKEDIIDLTESDAALLGMRLLEERRWKQACSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
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