NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186041_1007581

Scaffold Ga0186041_1007581


Overview

Basic Information
Taxon OID3300017264 Open in IMG/M
Scaffold IDGa0186041_1007581 Open in IMG/M
Source Dataset NameMetatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in inside host, 26 C, 35 psu salinity and 379 ?mol photons light - Symbiodinium sp. C15 (MMETSP1371)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001767Metagenome / Metatranscriptome638Y

Sequences

Protein IDFamilyRBSSequence
Ga0186041_10075812F001767N/AILAQGIGSVLLQPFPVYPSAESVRAAMATTAPLLGQQQKKGHSKASIFYGADEYLEELKRKYARDHEIAAMKNLLPGEADPNAAGVAQSQDKMLKVEKNNENRSLKTNRLFPTANKPDPMPQNLAFLFTKITPEQMMYMWNVLTAIFVTQVLMIIAYCAALAMFPGHWWTCTLMFGVPFSYIAIQQIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPFSTNWYKYFLTVPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNLFVLSLWVCVWLLGTWPLGRPLSEGWRFMFTVSFFARVGFSLAWMFITNFTHSLPWNEFLAQDPGRTWPILHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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