NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186319_111091

Scaffold Ga0186319_111091


Overview

Basic Information
Taxon OID3300017266 Open in IMG/M
Scaffold IDGa0186319_111091 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 20 C, 35 psu salinity and 702 ?mol photons light - Amphidinium massartii CS-259 (MMETSP0689_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1825
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-17.0Long. (o)146.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001767Metagenome / Metatranscriptome638Y

Sequences

Protein IDFamilyRBSSequence
Ga0186319_1110911F001767AGCAGMATAEPLLPKSNRARVSVFYGADEYLDELKKKFEHDHEIAAMKGILPDEGDPNASKIQSGDKMMQIQKNNENRSLITGRLFPTPNKPDPMPAELAFLFTKITPEQMMYMWNILTLIFVAQCLMILAYCAALAFFPSYFWTCTVIFGAPFAYLAIQHIYVDHDVMHGATFPPYTWQKYLTHPFSDFISLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEEFQYWMLEWTWRNKKYPFPIHPFGLILTGALVPVIHFFGLNDTGSLFALEWYFHFPDAAPGDKCNKEFWKKWVPRRCAHTAFVVSLWACVWLLGTWPLGRSLSEGWRFVLPVTCCARIGYSAAWMFITNFTHSHPWNNFLAKDPERTWPWLHETMAFVLGGKHRWNEMLFHDLHHAFPNAVGTLSQRGRFHGWRKVHDASVEVLHRGLWKANGDEETEMQKTQRQRSLLMKKNMAKH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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