NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186043_1029524

Scaffold Ga0186043_1029524


Overview

Basic Information
Taxon OID3300017272 Open in IMG/M
Scaffold IDGa0186043_1029524 Open in IMG/M
Source Dataset NameMetatranscriptome of marine host-associated eukaryotic communities from Pacific Ocean in f/2 medium w/o silicate, 25 C, 35 psu salinity and 713 ?mol photons light - Gambierdiscus australes CAWD 149 (MMETSP0766_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)657
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)35.0Long. (o)173.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000631Metagenome / Metatranscriptome971Y

Sequences

Protein IDFamilyRBSSequence
Ga0186043_10295241F000631N/AAVHSSVWRNLPSPAAMQRSSIVIIAAVAACLCLEASAVRAGRSRQEPDTSCGKGFQNLVKGSQDYYATAAVKLWTHPSRTLDNATFEQEFQCWFANMCTVKCGGLPSQADARKKELTSRCQSVTADWLKIWNLFTQAEVEWFKKAYPAEELGSGEEESTVHYKQAMETAKEVGKKELLCLTLFTIDDECVRWPYIRLG
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