NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186532_1013835

Scaffold Ga0186532_1013835


Overview

Basic Information
Taxon OID3300017278 Open in IMG/M
Scaffold IDGa0186532_1013835 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, no silicate, 15 C, 29.4 psu salinity and 386 ?mol photons light - Heterocapsa triquetra CCMP 448 (MMETSP0448)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)41.54Long. (o)-70.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088217Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0186532_10138351F088217AGGCGGMLVTASLCRCICGSGRRDNHFDVDGKSLGDLDGALEEASEQQLPPEDMGLLSYDVLADQPLRGVPIREGELWYLSAEESIDPVPLSLYVNGFSFVLAQHEVSVSLSPFSLVRNCKFQSTYSDSLSLADFKVFKVSLYTQGICYYFGVRCEDERQAEEERSRWVLDFSRAISLVTQSLFPPFSISCDPLASVPATQQRLMAGYLIHHDDTAVASVLYCELHPQSEQKAKLVCYENELCNTPLMDIYMTDHSVCCEKVGINCSCFCVEGHQFSSRTLSERRLWLRAIANIKVKLQNQAPAPSDEEIRHYRLAIKEHLDTIRATLQSKAPTDALLKRNLQSTELDVAEQGAGDKGEVEQ
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