NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186098_1006901

Scaffold Ga0186098_1006901


Overview

Basic Information
Taxon OID3300017288 Open in IMG/M
Scaffold IDGa0186098_1006901 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 18 C, 32 psu salinity and 226 ?mol photons light - Prorocentrum minimum CCMP 1329 (MMETSP0053)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1714
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002906Metagenome / Metatranscriptome521Y

Sequences

Protein IDFamilyRBSSequence
Ga0186098_10069012F002906GGAGMAGGAGGVAATGDPHLANVFGQRFDLMKPGNHVLINIPRGRYNNVMLRVEAEARQLGGQCADMYFQDLNVTGSWVEEKHTGGLRFQAQGSHNESPQWLKFGKVQIKVAHGHTQQGTMYLNLYVKHLGHAGFAVGGLLGEDDHLEAMTPPGECVHRTSLLQVSALEGSSVAEASFA
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