NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186323_1012235

Scaffold Ga0186323_1012235


Overview

Basic Information
Taxon OID3300017291 Open in IMG/M
Scaffold IDGa0186323_1012235 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in enriched f/2 medium with seawater, 10.6uM sodium metasilicate, 16 C, 35 psu salinity and 92 ?mol photons light - Pseudo-nitzschia fraudulenta WWA7 (MMETSP0851)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1559
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)34.0847Long. (o)-119.05Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064392Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0186323_10122351F064392N/AANAGVDAVTAAVPQQEDLQDAPAVLTVVGRHKDRENQDLQGEYYRLPSDVHGRPAYRKPGTRTVIRYWSVADRWLIDREGLQESDVCNAYAEQGGFRHPASDDLVWRVWESQHRAHVRDPELLVTRAPSFIQVLGRALGKENWALNGEYKLIGLHQGKVAYQKTGKFKHAIRYWALGDRWLIDLDGLRDVDVCNAYADARGSAHPGIAGLTWHVWDSMRSRHVIDSCLQSIVTPSVIELVGREAPKENVSMNGSYYLIGMHAGRPAYIKSDGSNHALRYWPREDRWLIDLDGLREADVCNAYAEAGGGHEHPGNLSIVWHVWETSRGRHLTDPSVRTLVVPHWVRVMGRDPYKENSSINGDYELTNVIEGKAAYKKDGTDHVIRYWPAEDRWIVDLEAGFNGGDVANAYADAKGSDHPGNNELLWYIWETSRGRHVADEDVMTEAVYLPHPDWTKVPGARVNVLEAGGGG
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