NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186633_1015216

Scaffold Ga0186633_1015216


Overview

Basic Information
Taxon OID3300017295 Open in IMG/M
Scaffold IDGa0186633_1015216 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater ice eukaryotic communities from Arabian Sea in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 303 ?mol photons light - Peridinium aciculiferum PAER-2 (MMETSP0370)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1259
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameArabian Sea
CoordinatesLat. (o)18.6Long. (o)59.85Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073576Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0186633_10152161F073576N/AMATPPLEELKTGDRVRVQGGRNFEKFHGGMEGTIVENNPDSRNLLVQFDDGSNAGTEPMTVAYRHLEFAPGRGGYRAGHVPAAPSQPSVQAPKEPQGPLLDGHGAFTTRQLVMLSGLQSAAAQELNGKFGRLRKFDQTAERWEVDVRCGLGIKRLKEENLEPPPKPEVEPGLLVAEMKERGNKAFTGQAFEEAVAYYGAALDLLEADEGEKPPEAEDAKYVAVLCSNRAQVFITLCREINGEEKAISKEARSCAMRANMDSARAIELDPTFGKAYYRRGCAVLGMAPSASRAKEAIHCLEVALSGRASGGQDGIVLPNAMRHEVANLLDYAKRRLDACVEAAIPDVEQCRENCRQQ
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