NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186450_117247

Scaffold Ga0186450_117247


Overview

Basic Information
Taxon OID3300017300 Open in IMG/M
Scaffold IDGa0186450_117247 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Girton, Cambridgeshire in DY-V medium with yeast, 18 C, 0 psu salinity and 471 ?mol photons light - Spumella elongata CCAP 955/1 (MMETSP1098)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)660
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUnited Kingdom: Girton, Cambridgeshire
CoordinatesLat. (o)52.2333Long. (o)0.08333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000665Metagenome / Metatranscriptome949Y

Sequences

Protein IDFamilyRBSSequence
Ga0186450_1172471F000665N/ARIALDPRFDGMESRLGAVYYNFPHSGAVQGFFDSHPMVNWRHENLMRLFFRALRHFVKPGGIVKVSSNAGAVGVRYSYIVGSAIENEFLHTETMPFLEWHLHRYGRSYGDKRDVYKRPDAKNNQSYNAQNANSDMVYCFCYSPTGNTLPKQSIRMPPSMQTLINCKDGPFKNMGPGPARENMAKQLHARXXXMRASSRKFPALTSVKRRTASGVARRPS
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