NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186630_1036133

Scaffold Ga0186630_1036133


Overview

Basic Information
Taxon OID3300017303 Open in IMG/M
Scaffold IDGa0186630_1036133 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater ice eukaryotic communities from Messo in MWC medium with 4.55 nmol/L selenium, 3 C, 0 psu salinity and 680 ?mol photons light - Scrippsiella hangoei SHHI-4 (MMETSP0367)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameRussia: Messo
CoordinatesLat. (o)68.46306Long. (o)78.22333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000631Metagenome / Metatranscriptome971Y

Sequences

Protein IDFamilyRBSSequence
Ga0186630_10361331F000631GAGMKSVAVAFFAVVSSLATSGIDAAMLRAQARQEPDTACGKGFDNLVKGSQDYYRTAAVELFTHPSHTMDNATFEAEFECWFASMCTTKCGGLASQADSRKAKLTEMCQSVEADWLKIWKMFSQDEIKWFKNSYPSDEVEGSEEGSEVHYKQAMETAKEVSKKELLCLTLFTIDDECVKWPYIRLTK
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