NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0186125_1031504

Scaffold Ga0186125_1031504


Overview

Basic Information
Taxon OID3300017307 Open in IMG/M
Scaffold IDGa0186125_1031504 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in GSe medium wiht seawater and antibiotics, at 22 C, 18 psu salinity and 261 ?mol photons light - Durinskia baltica CSIRO CS-38 (MMETSP0117_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium catenella(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004270Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0186125_10315041F004270N/AMKLSIVALAAAFAKQAAATVVSSSKSGLDINQKVYIENQPVLGDGAGEGILNVCQGFARQHVDNPGAPEVKVCGTGIKATFFLRNRCQGYYEHQQTVGKCDSGMPSTTCDSWSPADDRRFGAYQSYIIEQC

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.