Basic Information | |
---|---|
Taxon OID | 3300017311 Open in IMG/M |
Scaffold ID | Ga0186119_1036136 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from unknown location in HESNW medium w/o silica, at 18 C, 30 psu salinity and 654 ?mol photons light - Protoceratium reticulatum CCCM 535 (MMETSP0228) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 650 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | ||||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000631 | Metagenome / Metatranscriptome | 971 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0186119_10361361 | F000631 | N/A | LKPFGCAPGLPRTTAMQLSARIALAAASLLAAQAAVLRGGVSQEPYTSCGKGFGELVKGSQDYYATAAVALWGHPYHTMDNATFEQEFQCWFAAMCTTKCGGLQSMAISRKDELTKRCMSVEADWLKIWNLFSQEEVEWFKKTYPTNSIADQTSMFYKQAMETAKEVSKKEVLCLTLFTIDDECVKWPYIRMGK |
⦗Top⦘ |