NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186124_1021509

Scaffold Ga0186124_1021509


Overview

Basic Information
Taxon OID3300017314 Open in IMG/M
Scaffold IDGa0186124_1021509 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from unknown location in GSe medium wiht seawater and antibiotics, at 22 C, 18 psu salinity and 279 ?mol photons light - Durinskia baltica CSIRO CS-38 (MMETSP0116_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1181
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073576Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0186124_10215091F073576AGGMASLEELQTGDRVRVQGGRNFEKFHGGMEGTIVENRPDSRNVLVQFDDTGTSGPDPLTVAYRHLEPAPEKGGYRSGHVPTAPSQPSSQGPKEPQGPLLDEHGAFKMRDLVQLVGLQSAAAQELNGKLGRLRRYDPVAERWEVDVRQGLGVKRLKEENLVRPDAPQVEPGLSVGELKERGNKAFQEQAYEEAVAYYTAAVDMLEEQGSAVPEAADEKYIAVLYSNRAQVYITLCREVHGEEKIIGREARGYAMRANMDSSKAIELDPTFGKAYYRRGCAVLGMAPSASRAKEAIHCLEVALSGRASGGKDGIVLPNAMRHEVSSLLDYAKRRLDACVEAAVPDVEACRENCRQQ
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