NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186517_112848

Scaffold Ga0186517_112848


Overview

Basic Information
Taxon OID3300017324 Open in IMG/M
Scaffold IDGa0186517_112848 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 14 C, 33 psu salinity and 537 ?mol photons light - Gonyaulax spinifera CCMP 409 (MMETSP1439)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)43.8441Long. (o)-69.6413Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088214Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0186517_1128481F088214N/AEQAMQEQRMDHFFSKTFNQESVGQLFPMAWASNVEIARKECAGKACSQLHPRPDFAQAHLLEDAIESAVPVFDKATEDGSRFSIYRIGSLEVRTITEPECEPVIGAVFSVHTPAEAPKQAISEQERIVKATEHVERVGLAFQVYVALETDQKNVIVFEEIEDGTLSREENPSNLEDRTSLAKVLRTAECMDSNMTVAAARECEKNVYSLVTGDSAASVLQAA
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