Basic Information | |
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Taxon OID | 3300017332 Open in IMG/M |
Scaffold ID | Ga0186256_119441 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from Puget Sound, Washington in HESNW medium w/o silica, 16 C, 30 psu salinity and 231 ?mol photons light - Noctiluca scintillans (MMETSP0253) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1127 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Puget Sound, Washington | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011080 | Metatranscriptome | 295 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186256_1194411 | F011080 | AGGAG | MPSSLRAREGKLSVQEMKAQLETLRKPTAKMMEEVFKKYYDLCMAADPPMTQIDLCEPSINWKALLMSLPPPQNSSILGCGIRKVILKETDCVYEGIYRFHVERLDGSLEVFEWREAYDDPYHSYKDKSFRHDVDTALRAAVLPQLIEYKEMLAKDNQMEFYSSISGSALPWERAVVQHFPTTFESLVDAFLNEKQLRLEQVKLEHCAEHAYRIQDPELLERWRAFHRATAHYRIISTSEAMEEDHL |
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