NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186437_1044270

Scaffold Ga0186437_1044270


Overview

Basic Information
Taxon OID3300017333 Open in IMG/M
Scaffold IDGa0186437_1044270 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Gulf of Mexico in f/2 medium with artificial seawater w/o silicate, 18 C, 28 psu salinity and 260 ?mol photons light - Lingulodinium polyedrum CCMP 1738 (MMETSP1034)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.8Long. (o)-97.13Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026799Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0186437_10442701F026799N/ALKLGRRPGGPPAASGLLWLREVRPIAEMGAHGSCCSCEDETTSSYVEDGKKPRRDCRKRSANEITIIIDRRTGEGLGIDASPEKNGTLEIKNITPGGLVDRWNHSQPDDSREHVLPGMRVIEVNGRYNSAMQLIAACRETEILHITLSTLNSAPP
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