NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186375_121368

Scaffold Ga0186375_121368


Overview

Basic Information
Taxon OID3300017334 Open in IMG/M
Scaffold IDGa0186375_121368 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Narragansett Bay in marine media K with soil extract, 18 C, 35 psu salinity and 157 ?mol photons light - Eutreptiella gymnastica CCMP 1594 (MMETSP0810)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Euglenida → Spirocuta → Euglenophyceae → Eutreptiales → Eutreptiella → Eutreptiella gymnastica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: Narragansett Bay
CoordinatesLat. (o)41.6Long. (o)-71.4Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047094Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0186375_1213681F047094N/AVFPLERAVTPFSEYKLRLGIGIMIEDGIKPKTPEAVRAWVNGGGKLKVGGDVLVGLKRWETLVPKTPDVDKLLSNMKEELETALAQKSKLIKPDDLPASFTAAQRYTALGYQSKGLEFVTKRQAMGKDLSALLLAPHVLHREPKMLPSGTKFDLLSNPRDYKQRLSVTFD
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