NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186050_1028189

Scaffold Ga0186050_1028189


Overview

Basic Information
Taxon OID3300017335 Open in IMG/M
Scaffold IDGa0186050_1028189 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from York River, Chesapeake Bay in f/2 medium with natural seawater and antibiotics, no silicate, 22 C, 21 psu salinity and 269 ?mol photons light - Kryptoperidinium foliaceum CCAP 1116/3 (MMETSP0119_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameUSA: York River, Chesapeake Bay
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000339Metagenome / Metatranscriptome1270Y

Sequences

Protein IDFamilyRBSSequence
Ga0186050_10281891F000339N/AGLSGFLAVRARQREMDEMWYTFSTLALLVATIAAAVLGDMNFWFNMQPYYDIENLNTYPSVNPAREKGQQLMDAGRVYFADGSGLDMRKAMGFKNLDLYCVAPIVHGEEQLASYDFWAVGVNCCSGVSSDFRCGEFNNPHARSGLRLMRDDQRPFFRLAVQQAEAAYNIKSTHPIFFYWMQDPVAEMNAYRDDGFKYFLLGVFTHFAFNVFCVVCAVVGFSKIGRY
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