NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186228_113360

Scaffold Ga0186228_113360


Overview

Basic Information
Taxon OID3300017336 Open in IMG/M
Scaffold IDGa0186228_113360 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from South Pacific Ocean in marine media K with soil extract, 1 C, 36 psu salinity and 391 ?mol photons light - Phaeocystis antarctica Caron Lab Isolate (MMETSP1100)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameSouth Pacific Ocean
CoordinatesLat. (o)-77.625Long. (o)-179.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086477Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0186228_1133601F086477N/ARPTQRAVGRREARREARREAMTKRGTNGLADGLKEPEEIALTWRQDKLGDGIQLDAECTSVSRRCRNGWGVQLSDGWLTKDITTVAIECHEMTDDTYIGVVGRNYNPQDWNGNLAESKHAVVLHAATGRVYHKGSETSFVLRPLTSGARLIMTIDMQTRELTLELKASGTADDAPAESTLLLEDIQAEVAACVCLGPGEQNLRIAGCVRSKPEFKLLGKRVKDFWDEENIVPPLQANEGKCDDDPQSLARKMQENLKKVAGFLE
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