NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186492_1022898

Scaffold Ga0186492_1022898


Overview

Basic Information
Taxon OID3300017338 Open in IMG/M
Scaffold IDGa0186492_1022898 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from Baffin Bay in L1 medium with seawater, 2 C, 33 psu salinity and 548 ?mol photons light - Heterocapsa arctica CCMP 445 (MMETSP1441)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameAtlantic Ocean: Baffin Bay
CoordinatesLat. (o)76.25Long. (o)82.55Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001939Metatranscriptome614Y

Sequences

Protein IDFamilyRBSSequence
Ga0186492_10228982F001939AGGAGGMEYRAEDSFGNTALAPSCSKIECGEYSCPTPFELKTDGTCCGYCWAPDHVVAADRHVVTAYNATGNAVEQCESAPSTCKGPGANAVRCFRPSCRAGSQPNCAPGSCCAMCTTR
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