NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186233_117558

Scaffold Ga0186233_117558


Overview

Basic Information
Taxon OID3300017340 Open in IMG/M
Scaffold IDGa0186233_117558 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 111 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0734)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-48.0Long. (o)-16.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044273Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0186233_1175581F044273N/AMVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATIKFHTRDLTAHTIDITEDDNSAKIVCDLGPTHHNKKMNREVINELKKN
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