NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0186677_1021995

Scaffold Ga0186677_1021995


Overview

Basic Information
Taxon OID3300017343 Open in IMG/M
Scaffold IDGa0186677_1021995 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from North Sea in half strength K medium with seawater and selenite, 20 C, 26 psu salinity and 298 ?mol photons light - Azadinium spinosum 3D9 (MMETSP1038_2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1209
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameNorth Sea
CoordinatesLat. (o)57.0525Long. (o)2.50056Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035774Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0186677_10219951F035774N/AQDLWLQRLSRSRGSVGRGRKWMKAWSLAPCRACACDGEDDLQGQVGGKQAARVGLPIEIRMLKPDYVPQVRGLQTYSSSPDQPLLGVPIREGSLWHLSAQDRFEPVTFYLYVNGFAFSTAEGLEASVSLSPFSLVRNCRFQAGECSKLKSFKVSLLEPEPCCYFAMRNKSESNAEEERSDWVLGLSHTILLIIDSLLPPFSVTCEPLSFAPQTARRLLAGYLIHRDDASSISVVFCELQAPSGGSAHLITYEDELCEKVKADIVVAEGTVCCDVVGINCSCFVVDQHHFATQTPSERKLWLRALSNVKVKVQNRAPDPTQEDLQNFRRSIREHISALQKTIETRIVRDPLLALAGSAKAVQSAESNTEATSPVMPRPDGNRDKARSANVSL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.