NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186452_1018298

Scaffold Ga0186452_1018298


Overview

Basic Information
Taxon OID3300017352 Open in IMG/M
Scaffold IDGa0186452_1018298 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from English Channel in Marine Media, 18 C, 36 psu salinity and 462 ?mol photons light - Haptolina brevifila UTEX LB 985 (MMETSP1094)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameEnglish Channel
CoordinatesLat. (o)49.35Long. (o)4.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019772Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0186452_10182981F019772N/AMATGMDSPPTSVPVSPRFEWSKIGTDWEADGTTVVSSGMLAEERYAVGSTLVREGKRTFTYTINKVFYPDAHLFVGVAQITDDPERATTWAFNGPTGNLYIGKQLNEHGQENRKVKLHTEEEGFLVGKQEGSVIECIVDMDAKTLAFAVNGQDPIDCGITLPDCGVRPWIFLYHEGDSVTIEEVA
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