NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186692_1057682

Scaffold Ga0186692_1057682


Overview

Basic Information
Taxon OID3300017353 Open in IMG/M
Scaffold IDGa0186692_1057682 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 684 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0270)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.3122Long. (o)-82.601Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050388Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0186692_10576821F050388N/ASRISTPEAPAPLPYVPEDLRPEYEMMIKYFGLESFMYGAIGNSGNVFQKIAEMSNVSQNKLQTNELVKIILSTTGGVPATNHEEVLGPIGFHERSLENSYGAHPSSVTIRFLKHRVRVEALELRAKMADIPAHMSNHWDFWHGSECCRMNYVFSRSSPSTSRLEVMGIGHAWADEVQWRFPRDFCIEHIVLH
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Institute for Fundamental Biomedical Research
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