Scaffold Ga0186620_1042316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186620_1042316

Scaffold Ga0186620_1042316

Overview

Basic Information
Taxon OID	3300017356 Open in IMG/M
Scaffold ID	Ga0186620_1042316 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine algae-associated eukaryotic communities from Gulf of Mexico in L1 medium with seawater, 25 C, 35 psu salinity and 739 ?mol photons light - Karenia brevis Wilson (MMETSP0648_2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	692
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075639	Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186620_10423161	F075639	N/A	LDDCMSTDKFVASEIDSCAKVCFSLPECEWWVWGTEEGEQKCWFRTGDSGREAGEGWVSGKKACHAPGTTVMPMGNAECWAEGFGYENCCDAKFGPNGNAQCWDGVYNYDRCCFPKEEL

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