Scaffold Ga0186038_132003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186038_132003

Scaffold Ga0186038_132003

Overview

Basic Information
Taxon OID	3300017357 Open in IMG/M
Scaffold ID	Ga0186038_132003 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine host-associated eukaryotic communities from unknown location in f/2 medium with natural seawater, 50% L1 mix, no silicate, at 29 C, 35 psu salinity and 369 ?mol photons light - Symbiodinium sp. C1 (MMETSP1369)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	584
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016665	Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186038_1320031	F016665	GAG	MVLRSPTFLVGTEKQRGLLNEFSRRDQHFTEEYQKNKPLCFSAKTYQRTHPKKMSLGHKDADATLASPMVLGVADGVSQLEEFGMDASELPQELLRVCEDLGMNQLIPDRPVNPQDAYRGPVSLLKEAYEETESLGSTTILLAVLDNSTRIHGKLHPMVAVLTIGDCEMLMMRRLDGRQS

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