Scaffold Ga0186026_1021495

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186026_1021495

Scaffold Ga0186026_1021495

Overview

Basic Information
Taxon OID	3300017359 Open in IMG/M
Scaffold ID	Ga0186026_1021495 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine sediment eukaryotic communities from Tyrrhenian Sea in L1 medium with seawater, 20 C, 33 psu salinity and 588 ?mol photons light - Alexandrium andersonii CCMP 2222 (MMETSP1436)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	525
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	Tyrrhenian Sea
Coordinates	Lat. (^o)	40.75	Long. (^o)	14.25	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006937	Metagenome / Metatranscriptome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186026_10214951	F006937	N/A	GCWFTAPGESSKDAFMRRLKRSDPSYAIYEAYAAEHTERWEGAKALTMDQAIAEMPEIERKYALECAEYDNVLFGMSEELAGTAKLEQEQLAKLADGDSLQAQLDSGKLVAVEGGAQVSSAADVAKSLHEFESQRDKAVDSIMAIKISLDKKK

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