Basic Information | |
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Taxon OID | 3300017359 Open in IMG/M |
Scaffold ID | Ga0186026_1021978 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine sediment eukaryotic communities from Tyrrhenian Sea in L1 medium with seawater, 20 C, 33 psu salinity and 588 ?mol photons light - Alexandrium andersonii CCMP 2222 (MMETSP1436) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 516 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Tyrrhenian Sea | |||||||
Coordinates | Lat. (o) | 40.75 | Long. (o) | 14.25 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026799 | Metagenome / Metatranscriptome | 196 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186026_10219781 | F026799 | N/A | LKSPSRASCPPPWPTPAAMGAHGSCCSCEDETSTSYVEDGKRPRRESRKRSPNEFTIIIDRRTGEGLGIDASPEKNGTLEIKNITPSGLVDRWNQSLPDDSREHVRPGMRVIEVNGRYNSAMQLIAACRETEVLHITLALPEH |
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