NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186694_1014413

Scaffold Ga0186694_1014413


Overview

Basic Information
Taxon OID3300017361 Open in IMG/M
Scaffold IDGa0186694_1014413 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 312 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0272)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.3122Long. (o)-82.601Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064392Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0186694_10144131F064392N/AAPVSSIPESRARQIVAIVPMAQMGRGFNGLDLSAQPASTAGNPADDLDDLPNIITVSGRHQERENQDLQGEYHRIANFHGRPAYRKPGTRTCIRYWSLADRWLIDREGLQESDTCNAYAEQGGARHPASEDLVWRVWESRHKQHVRDPEMLVTSSPSSIQVVGRASGRENFALNGQYKLVGLHQGRVAYQKEGEKHAIRYWALGDRWLIDLDGLRDVDVCNAYADAHGTQHPGAMGLTWHVWDSTRGRHLVDSTLQSVVAPGVIELVGREALKENTRMNGSYHLVGLHCGRPAYMKADGSGHAIRYWPREDRWLVDLDGLRDVDMCNAYSEAIGGFEHPGDLGMIWHVWETSRGRHLTDPQVRTFVAPHIVQITGRDPYKENAALNGQYTLVDVVESKPAYRKEGSEHVIRYWPAEDRWIIDLEAGFLGEDIANAYADAKGAETPGNNELLWYVWETSRGCHVADEDVIAEPIWWDTVDWSKVPGAARSNLLPAVE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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