Basic Information | |
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Taxon OID | 3300017362 Open in IMG/M |
Scaffold ID | Ga0186693_1043327 Open in IMG/M |
Source Dataset Name | Metatranscriptome of coastal eukaryotic communities from Gulf of Mexico in L1 medium, 22 C, 32 psu salinity and 675 ?mol photons light - Scrippsiella trochoidea CCMP 3099 (MMETSP0271) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 827 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 27.3122 | Long. (o) | -82.601 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F087219 | Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186693_10433271 | F087219 | N/A | AQCYKKNQYWANCKPSCDTAPDPNDGNKSWSCETVGPRGWGLALKGWPSLYCFSLYMPSGYEGGLLKAVLKANAGIFQCDGYDVFAAEPDTLGTSKDDIEVKAIQIPKISVGVSQDGTAGNAKLFMAVWDKVIAGGRFRNYDWTIKVDPDAVLVAWRIRDHMRPHVGQKVYVVNCNKFPGSPNFPMMYGAVEVFSQSAMVQYALNSWKCGKQLPWGSWGEDYYMTHCMDFIGVGRIGDFGILGDNMCTGANCADGGIASFHPFKNTGVWMQCWGQ |
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