Scaffold Ga0186177_1032730

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186177_1032730

Scaffold Ga0186177_1032730

Overview

Basic Information
Taxon OID	3300017364 Open in IMG/M
Scaffold ID	Ga0186177_1032730 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 15 C, 31 psu salinity and 520 ?mol photons light - Pyrodinium bahamense pbaha01 (MMETSP0796)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1024
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Goniodomataceae → Pyrodinium → Pyrodinium bahamense	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044291	Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186177_10327301	F044291	N/A	WLKPFWFKHLGRNPSQCGRDLATMKASAAIVFALLPVVAHGHTVHAQGLFPSTCRSRREKLAYAVDVALHCGRSLNDVYNCLATLTNPLDLMECVKVFNTNNACKEAMSKGCGDLEPKCCRCKTNDPMSNHQTGCLLEIFKGDSSNDACKLLEYSSGRYPREWFRSGKDNYRFYGNCSDAEEKGGAKFTQHVMCPTPWADWH

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